Gene detail

Detailed information of Chiridota_g16580 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g16580	STEP II SPLICING FACTOR SLU7	chr_8	55148330	55271272	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g16580

ATGTCATCTGGTAACCTTACGTTACCTTCTGTGGCAAGTAAAGCCGTTGGCAGGGAAGAGCCCAGCCAAGAATCCAGAAGAGAAGATTGGAGAAAAGCCAAGGAACTTGAAGAAGCAAGGAAGGCTGGTACTGCCCCTGCTTTAACTGACGAGGAGGGAAAAGATATCAATCCTCACATTCCACAGTACATTTCAAGTGTACCCTGGTATGTAGGCTTCGGCCACCCAACTCTCAAGCACCAGCGGGTTCAACCAGAGAAAGTCAAGGTTTTCAGTGGTATCGATGATTGGTACAGCAGAGGGGTCAAAAAGACGGGCCATGTGACAAAGTTTCAGAAAGGAGCCTGCACAAACTGTGGGGCAACAACCCATAAGAAGAAAGATTGTATTGAGCGACCTAGAAAAGTTGGAGCAAAATTCACCGGTGAGAAGATAGCTCCTGAAGAATTTCTACAACCAAGTTTTAACTTTGATTATGATGGGAAAAGAGATAGGTGGAATGGGTATGACCCAAAGGAACACGAGCAGGTCATTCAAGAATTTGCTAAAGTTGAAGAGGCAAAGAAGCACCTGAAGGTGAAGAAACTTTACGATGAGATGATGTCAGGGGAGGTGGAGCCTGAAGACATCAAGGGAGAAGGAAGCGACCGAGAGGATGATGAAGACAAGTATGCTGATGACTTTGACATGCCTGGAACCAATTTTGACAGCAAAAGGCGGATCACCGTGAGAAATCTCAGAATACGAGAGGATACTGCAAAGTATCTGTATAACCTGGACATTAATTCCGCCTACTATGACCCCAAGACCAGATCAATGAGAGAGAATCCCTTTAAGGAGGGCAGCAACAAAGCTGGAGAAGCAAGTTTTGCTGGAGATAACTTTGTTCGGTCTGCTGGACAAACCCAGGAAATGGCTGCAGCTCAGTTGTTTTCCTGGGATGCAGAGAGGAAAGGAACAGATGTACACCTTCAGGCCGATCCAACCAAGCTGGAGCTCCTACAGAGGCAGTTTGTCACCAAGAAAGAGGACTTCAAGAAGAACCAGAAGGAGAGTATTCTCAGCAAGTATGGTGGAGAGGAGCACTTGGAGGCACCCCCCAGGGAACTGCTGCTTGCTCAAACTGAAAACTATGTTGAGTATTCCAAGCATGGCACTGTGGTGAAAGGGCAGGAGAAGGCCAAAGTGAAGTCACGTTATGAGGAAGACGCCTACCATAGCAATCATACAAGTGTCTGGGGTTCCTTTTGGAGAGATGGCAGATGGGGGTATGTGTGCTGCCATTCTTTTGTCAAGATGAGTTACTGCACCGGAGTTGCCGGCAAAGTCGCTGCTCAAGAGGATTTACTACCTACTGCTGAACCAGAGAGGGCGCCAACACCTGAGAAATCATTAATGGAGCAACACAAGGACAAGCTTGAAAAGGAGAAAGAAAGAAAAATTAAAAAGAAGAAAAAATCATTAAAGAAGCAGAAGGCGGCATCCAAACAGCAAAAAAAGGATAAAACTGCAGCGAAAAAGAAGAAGTCGAGAAATTCATCTTCGTCAGAGTCTTCCTCAGAATATTCTTCTTCAGATTCTTCGGAATCATCCAGTGAGAGTGAAGATGAGGAAGCGATCCGACAAAAGAAAATAAAAGAGccggttccgtctcgtggacgaacccagtgcgtttttgtagacactattatgatattcataccgtgtccaaacgctcttccggttggcatgttttccgagtttctaactcaggttcatgcaatgtttgcctcagttactgttaacgaagagtgccttgatctgtttgactCTAACTTTGATCTTTTCTCTATAAAGACAgcaccaaccggtaccgcaccaacacggtaccgcaccaacacagtaccgcaccaacacggtactgcaccaacacggtaccgcaccaacacggtaccgcaccaacacggtaccgcaccaacacggtactgcaccactgtactgcaccaacacggtactgcaccaacacggtaccgcattaacacggtaccgcaccaacacggtactgcaccaacacggtactgcaccaacacggtaccgcaccaacacggtaccgcaccaacacggtactgcaccaacacgacaccatttgggagggatacatggaacaaagtgggatgtgtcagactacggttagaaagcattaaggaccacgagggcactgttgaacatcatgattctgtttccctccagttacaaagtgagacatctaaacatgttggtgaaatgataacaaaagcaaaggagataagtcgagaacacatggttaaagccttccaatgtctgtatttcttagcaaaaaacaacatccctcatacaactaactttgagaaattattggacttggtgactcagttgggattagatatcaaaggtaaaatcttcaagggtactaatgcaaaatacacctcggaaacttccattcaagaactcctaatgtgcatcagtgaagtcattgaagtagaaacacttgatgagttgcgtcaaaataagtacttttcattgatgattgatgaaaccactgacattagcacaattaaacaaatggttatccatgcaagatacgtaaattccaagggggaaattgtcacaaagttcttaaaaatactgaattgtcttcatagcgactctagcagagatgagaacttaactttaaatgcagacaaaatgtgtagcatagtaacaaaatacatgcaggagagcaaattgccatttgatgggttagttggtcttgggactgattgggcttcagttatggttgggaaacacaatggagccgtcaagaaaatagtagattttcaaattgcaaaacaagctggtaatgaaaacattgttaaagcattggggcaacattgtgctgcccataagttaaacttggcagcatccaagtctggaaacacatttgctgccattgcaaagttcaagaaaacattgagtaaacttcatgaattctatgcaagaagtgctgtaaggcccaaaggactggagagtgtgcagaaacttctcagtgattccctacatgcaggatcagatggtgagagtgcaactgggaaagtaaaggatccaagccctactaggtggttagcattaggaaggtgtgccgtgggattgaagaaaatccttccaagtgttcttatcagtctcagcagagagagtgaagaacgaggtgaaattgttgctgctggactttaccacatgatgactaaaatcgaatttattgccattctccttctcctctgtgacatccttccaactatccacattctcagttgtttgtttcaaactgaatcgatagattttgcacaggtagaaaagtttaaagagtcaacattgaaggcacttgaagcaaagaaggacaaaccttcttataatgaaaacttcaaaaaattactggaaaatctcagcaacaatgacatcaaagtaaatcttactgatgaagaagctggaaaggtggcactactagcatttgacactaagatcaagaaaccatttattaacaaactcaaagaaaacatatttgaaagatttcaaaataaccatgtgatggaggcatttagaaagtttgctgacaagtcatattatgagccaaagaaggaagcagaattaagcaagtctgttactattttgagtgaacaatttggcctggatgtggatgatgtactggcagaagtttcagatattcaacattgcattgattctcttcttcctgcaccagacatgcaagaaccaacaacaagcacaaaaacaggcccatccaaatttatagatatgattttgtcacagaaaacagcaagcaacatgtttccaaacatttcaaaactcgctaaagtttataaaactattcctccacatactgctgattgtgagagggatttctccaagatgaaacttgtgaaaagggatgttagaaacggggtgaaggaagatacacttgattatcttatgcgtattagcatcaatggaccccctcttgacaaatttccatatgcggaagctgtaaagttgtggtcagagaagaaagaaagaaggtacaaagtgagattgacctaa

Transcript

Chiridota_g16580

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05699	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF11708	Slu7	Pre-mRNA splicing Prp18-interacting factor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008906	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR021715	Domain	Pre-mRNA-splicing factor SLU7 domain	Interproscan
IPR039974	Family	Pre-mRNA-splicing factor SLU7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12942	STEP II SPLICING FACTOR SLU7	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0008380	Biological Process	RNA splicing	Interproscan
GO:0030628	Molecular Function	pre-mRNA 3'-splice site binding	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-