Gene detail

Detailed information of Chiridota_g14403 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g14403	CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED	chr_7	40094981	40140099	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g14403

atgtctaacttcagtaatatccttatcaacatcgccacctgctcaattcccaaaacctccaaacccccaaatcatccccccaacccctggttctcagatgactgcaaaaccgccatcaagaacaggaaaagagccctcaggaactttaaaactaacccgaccacccataaccttaacctctttcgcatcagccgtgccaaggccagacgcactatcaaggacagtaaaaccaacacttggaacaaatttatctcttctctcaccaccaacacccccactaagaagatttggagaatggttaacagcttccacggcagagtaggcaaatcttccatctcccatctctcttggaatggagaccttctcaccgcaaaaaaagacatcgttgaccacctcgccgcctctttcagcaacatctcggcctcgaccaactactccaatgctttcaaaatcaaaaaagcttgcgatgaagcccggagaatcacttttccctctgacaactccgaaagctacaacacccctctcaccctttctgaattaaaccaagccatcagcgacgctggctgcacctccaagggcccagataacatcccctatcagtttctgaaacacctccccatcaaagccaccactaccctactcaccatcttcaaccacatttggtcctcacactcctttccccctatctggaggacagctattgtcatccccgtccttaaaccggggaaggatagcaccgaccccaccagctaccgacccatcgcccttacttgctgtctctgtaaaattatggaaaagatcattaatcagagactaaactggttcctcgagaccaacagaatcctctctcctcaccaaagcggcttccgaaaacgtcgcaataccctagaccagttaattacgctcgacaccgctatccgggaatcctttgcaaaaaaggaacacctcattgccatattttttgacctcgagaaagctttcgacactacttggaaatacggcattacccggaaacttcacaccattggcctcagaggccacctccccatctttattcaaaacttcctctcacccaggcagttccaagttcgtattggccacaccctctccaagccgtacccccaagaagagggcgtcccccaaggcagcatcctctcccccactctcttcaacctgagcattaatgacatcgggaatgaccttggccccagcatcaaacgtaccctctacgtggatgacttcaccatcttctactcctcccctagctttcctattgttgaaaataggcttcaaaccagcctcaatcagctgcaagtctggagcaacaataacggttttagattctccaaagacaagacagtctgcatgcacttttgtcatttcaacaacctccaccccaacccgaactttgtgctcaatgggaatcgcatccctaaagttgaaaacacaaagttccttggtctaactctagaccccaagctcacctacaagccacacatcaccaacctgaaactaaaatgcaatagctccctcaacctcctccgactgctctccaacactacttggggagcgaagcgctatgctctcctcaaaattttcaggctcaccattcgtgccaagcttgactatggcaatattgtttactgtgtcgctcacaactcatacctcaaccacattaacaccatccaaaatgaagccctcaggctttgtctaggagcctacaggacctccccaatcactagccttcatgttgaagccaacgaacccccctttctacttagatgtaaaaagcttagcctctcctatgcttttagagtcctcaccaacacccagaaccctgtttacaacctcattaggtaccccaatttctcctccctctttgataggactaaaaccctatcgccccccttcagcttacgcattaaatcagacctctttcaacttggcatcaaccccgccactctcggcacctattcctggcccacttttccgccttgggccaccccccttccttctgtccacctagacctctccacttatagcaaatctcaaactcaccctaatctcttcatcaatctccacaaccaaatcaaagaccaactctcaaattacacctccatctatactgatggctccaaggaaggcaacaagacagctgctgctgccatcatccaagacatcaccctcagtagcagacttcctgaccactcatccatcttttcagccgaggctaaggccattctcctcgccctcaactttattgagtactctcctcttagtcactttgccattttctctgactcaaaggctgttcttacttcattactcaatcttaaatgggataacctcacctgccacctcctcctccggaaactcttttctcccaccctctgcaggaaaagtgttcttttcttctggatacccagccatgttggcatccctggcaatgacagggctgatacagccgctaagcttgcccttaacctcctcccttccccttttcccaaaaccctctctgacatcaaaccgcttatcgcttctcttgttcgtgaccgctggcaaaccttatggaacttccaaattgataacaaactccatgttatccagcccacaatcccgatcaaatccaccattaacaacctttctcgtatcgacaacaattgggaacccaatgtctattactacctaagGTTAGCTTCTAGGATGGCCTCTATTGGACATATTTTCAACTATGTCATCATTGGATTGTTTTTGACATACCTGGTACATACTGGCCTTACCATGTATGAGATGTTTAATCCTGCACCTTGTGACCCCAAAGCAAAAGGTGCACTGTGTTTGAAGCCTTACATGACCCAGGCATCTACTAAGAAGCTACAGGCTGACTTTTTTGCATCCACAAATTCAAAAGGGAATCCCAAATTTATGACAAAGGTCATTAGTGCTACACTTGATTCAAAGCTTGAAGATTATGAATGGAATGTCAACATTTCAGTTCCAAGAACAACTAGAAAAAATGGCACTTTATACCTTTATCTAGTGGTACACCCCGAAGGTCACGACCCATGGGACAGCAAATATAAAACAATCCAAATGACAAAGCTAACAAAGTACTCCATGCCGAGGGCTGAGGAGATGATTCTTCTAAGTTCCACAAATCAGAGCAAAGAAGAAAGAAAGGACAAAGATGAACGACCGTTTAGCCACTGGAAACCAAAGTTTGAATTTAGTCTCTTAGGAGAGGACTTCATTTTTAGCACAAGGGCAATTCCAGCCGAGGTCCATAAATATATCAGGGTCTCACCAGAAGGTCAATATCTACCACTCCTGTTTGTGAATGACTTGATTCACCGGGCCAAAGACCTCTTACCAGTGAATGAAAGCAGTCTGGAGCTACCCCTTCAGATCCAATACAAGCCTATATCTATTGGGAAACTAAGATTGTTTGTAAATATTGAAAAATCCATGGAGATGATGAACACTCTTGGATTTCAAGATAAAGACTTGGAGGAGGTGATGTCACTATTCACAGATACCAACCTCTACCTCCTCCTGCTAACCATGTTTGTGTCCATGTTTCATCTTTTATTTGATTTCTTGGCCTTCAAGAATGATATATCCTATTGGAGAAATAGGCGTGATATGGTTGGGCTGTCTACAAAAACAGTCATGTGGCGAGGAGTGAGCCAGATCATCATCTTCTTCTACTTGTGGGACGAGGATACCAGTCTTCTGGTTCTCGTGCCAGCTGGAATTGGGACAATTATTGAGATGTGGAAGGTTAAAAAAGCATTTAAAATTGAGATATCATTTGATGGCTGGCGACCACGGGTTTCATTGGGTAGTAAATCAGATTCTGAGAAAGCCACTGCTGCAATCGATTCTCAAGCCATGAAGTACCTTTCATATCTACTCTACCCATTATGCTTGGGAGGTGCTGTTTATTCCTTGTTATATGTATCATATAAAAGTTGGTATTCTTGGGTCATCCATTGTCTAGTCAATGGAATCTACGCATTTGGTTTTCTATTTATGTTGCCACAGCTTTTTGTCAATTATAAGCTTAAGTCAGTTGCACATTTACCTTGGAGAGCTTTTATGTATAAGGCATTCAACACCTTCATAGATGATATGTTTGCATTTATTATCACCATGCCGACAGCTCATCGACTAGCCTGCTTCAGAGATGATGTGGTCTTTGTTATATATCTGTACCAAAAATGGCTTTATCCTGTGGATAAAAAAAGAGTTAATGAATACGGAATGGTGTTTGATGAAGATGAGAAAGACAGCTTAAAACCAGATGAGAAGAAGGAGCATACAGATTGA

Transcript

Chiridota_g14403

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075	RNase_H	RNase H	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF05602	CLPTM1	Cleft lip and palate transmembrane protein 1 (CLPTM1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR008429	Family	Cleft lip and palate transmembrane 1	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21347	CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0012505	Cellular Component	endomembrane system	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-