Gene detail

Detailed information of Actinostola_13075 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_13075	PHYTANOYL-COA ALPHA-HYDROXYLASE	scaffold26_size1070480	777314	786615	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_13075

ATAATGGCACAATATAGCTGCCTTCTCTTGGCGATTCTGGTCGCTCTAATCAAGAGTTCATTCAGCTATGAAGTGGGTAACATGTTTACAGAGTTCAAGGTTGAACAAGGCCAAGCAAAGTACACAGTACCTGTAACTACACCCAAAGGATTCCCTAACAACTTACTTGAACTACAGTTACAGTACAGTAGTGGTGGAAGCAATGGCCCTATGGGATTGGGATGGTCCATTGGTGGACTCTCGCAGATTGTGAGATGCCCAAAGACTCCGGCTCAAGATGGACAACGAAGAGGAATTCACTATGACCGAAGCGACCGCTTTTGCTACGAAGGCTCCAGACTGGTTCTGACGTCTGGGGTGTACGGTGCCGACGGTTCAACCTATGGTACCGAGTTGGACTCTTACCTCAGGGCCTACGCCAATGGTGCACAGGGAGTGGGGCCTCAAAGGTTCCTGATCAAAACCAAAAACAACCAGAAACTGACATTCGGATCACACGGCAACTCGCGTGTAGTCTCGCATGGGCAGCAGAGTATTCACGCGTGGAAACTGGATTCGATAAGCGACTATACCAACAATGTGGTCAAGATCATGTATGTGCACAACACGAATGGATTGCTGGTATCCAGAATTTCCTACAAAAACATGCTCATCACATTCGAGTACGAAGCTCGTAGTGACGTCTCCAAGCAGTACTTCAATGGCGGAGTGTTCCACACCCAAAATCAACGGCTCCGATCTATCAAGACCTCGGTAGAAGGTCAGCTTCATCGTGAGATTAAGATCACTTATCTTGCGGCGAAGACATCCAAGCAGAGCGTCGTGTCCAGTCTACAGTTATGCTCGAGGGGAGGTAAATGTTACAAACCAGAAAAACTGTCGTACCAAGGTACAGTGGATGCCGAGAGAACCAACAATCCAAGATACTGGATTCATGAATTTGGGATTTCAGCTGGAGGATGGGCTGTTGGAAAACACCCTCGTCGTGTTGTCGATATGAACGATGATGGTTTGGCAGACATTGTGGGCTTTGCCAGTGGAGGTGTTATGGTGGCGCTCAACCAGAAAGGATCATTCAAGCGTTCAAGGACATGGGTGCACTCGTTTGGCAGCAGTGCAGGAGGATGGGGAAACCAACACCCTCGACACGTCATAGATGTTAATGGAGACCATCTACCAGATATTGTAGGGTTCGCTAATGCTGGTGTTTATGTTGCACTTAATACTGGCAAAGAATCCTTCACGTCTCATAAGCTCTGGTTGCGACAGTTCGGGTACACCGCTGGCGGCTGGAGAGTGGAAAACCACCCCCGATTTGTAAAGGACATGAATGGTGATGGCTTACCCGACATCGTTGGTTTTGCAAGTGGTGGTGTGTACGTCGCACTTGGTACCGGATCCTCTTTCCAGCAGTCACGATTGTGGGTAGCATCGTTTGGATACTCTGCCGGAGGATGGCGTGTTGCTAATCATCCACGGTTCTTGGAGGACGTCAATGGTGATGGACTTCCAGACGTCGTTGGAATGGCCAGTGGTGGGATTTATGTATCAATAAACACCGGTTCGTCATTCCAGTCTCCTTCCTCATGGGGAAATGGATTGTTCGGGTACAACCAAGGCTGGAGGACCAACCAACACCCTAGGTACGTCTTGGATGTCAACGGAGATGGTTTAGCTGATGTTGTAGGATTCTCCTGTTGCGGAGTAGAGGTGTCTCTCTGTACAGGCAAGCGATTCCTTCCTTCAAAGACTTGGTCCCGTCGATTTGGATATAAAAACGGCTGGCGAGTGGATGCGCACCCTAGATTTGTCCAGGACGTAAACGGAGATGGGCTACCTGACGTTGTCGGTTTTGCAAATGATGGAGTCCGCGTATCCTTAAACACTGGATCGTCATTTTCATACGACAAATTGTGGGTGTCACAATATGGCAAAAGCGCTGGTGGATGGTCCGTCCAACAACACCCTCGATACCTCGCCGACGTAACGGGGGATGGAATTTTGGATATCGTTGGCTTTGCTAGTAGTGGGGTGTACATCTCAACGAACAACAACAAACAAACCCTGCTGACGTCCATTACCGATAGTTATGCCAACACTCACAAGATGACATTCTCTTCTCTGGCTGATAAAACCATCTATACTCGAGGAACAACTTTGTCGTACCCAAACCCAAAGGTTAACATTGCTCAAACTGTGGTGAAACAATTTACACAGAATAATGGTATCGGCGGGCTAAACATTACGTCGTATACTTACAGTGGTATGCGTATCAACCTGAAAGGTCGTGGTGCGCTGGGCTTCAGTGAAGTAACAGAGAAACGACACGAGAGTGGAGAAACTGTTGTGACATCCTATTTCCAGGATTTCCCTCTGACTGCTTTGACCAAATCCGTCACAAAGAAAGTTGGAAGTGGATTGGTCCTTCAAAGCTTTAAATCGTACGGTTCAAGAGGTAGTGGTCAAAAACAGGTTTTCTTGAAGAAGGACGTGGTGAACCACTATGAACTCAACGGCAGGCTTGTGAGGACTGAGCAGCTCATCATTGACAGCACTGATAATTATGGAAACATTAATGTCATGCGAAAAATCTCCAGTGGTAACGGCAATTCCTTCCTACAGACAACCATTAATAATTACACTAATAATCCCCACACTTGGTACATCGGAGAGTTGGACGCTGTTTCGGTGTCCTATCGTACAGATTCGACAACCATCGTAAGAAGATCGACTTTTTATTACAACCGTAACACAAGAACCCTGATGTACGAACTACGGGAGTCTAAGCATCATCTCGGGCTCAAGACGTCATATGTTTACGATTCCAATGGCAACGTCGTCGAGAAAGCAGAAACTCCCATATTTCCAAGTTCGGCTTCTCAAGTTGTCCCGACGTCTCGACGAGTTTTTATGACGTACGATTCGGAAGGTCTTCGTCTTATGTCGGTAAGAAACGATTATGGACACACTGAATCTTACAAGTACGACGTGTTTGGAAACATTGAACGCTTTACAGGTGCAAATGGGTTGAAGACAACTTACACGTACGACGCTTTTGACAGGCGTATCCAAGAGACACGCCCTGATGGCATTGCTACAAAAATGGACTTGTACTTAGACATCGAGTACGACTCCTTTGGCCGTGTGAGAAGACAAAGCTTGCCTTACTACTCCAAAGATCAAACTCCTTCTTGGATTGTCTTCAAGTATGACAGAGTTGGACGTGGAGTTGTTGAAGAACGCCCATTGGAGGGACCAGGCTCAGCTCTTACAATGAAAGTTTATAACGGACTTGTAACAGAAACTATCGATGCCAATGGCAACAGAAACAAGGTAGAGAGAGATGCTTTAGGAAGAATTGTAAAGGTTACTGATGCTCTTGGTGGGACAGTCAAATATCAGTACGATCCAGTGGGTAACTTGATCAAGACTATCGATCCTGTCGGTCACGTGACGTCTATGACGTACGACCAGCTTGGCAATAAAGTATCTATAGACGATCCTGACATGGGTTTATGGAAATACTCCTTTAATGCACACCGTCAAAAGCTATGGCAGAAAGATGCAGTGGCCAACGAGCTATTTTACACGTATGACAAACTAGGAAGAATGGTTGAGCAACGTTCCCCAGAGGGGAGGACTAGGTGGATTTACGATCAAAGCGCTTATGGCAAAGGAAAACTCTCAAAAACAGAATCTCCCAATGGTCACGTCATGGAGTATGTGTACGATGCTAAAGGCAGAGAAGCAACAGTCAAGCAGCGCATCGATGGAAAGAACTTTGACATCCATTCCAGTTACAACGACCTTGGCCAGCTCACACAGCAGACCCTGCCAGGAAACAAGAAGGTCAACTACTGCTACGACAACCAAGGATTCATGACTGTGGTATCAACACAACCGTGCGGTAAGGGATCAATACAGTCCGCTTATTGGAGAGCGTTGGCTTACGATTCATTTGGTCACATAGCTAAAGAACAGTATGGTAACTCACTGCTGACTGATTACAAATACGACGGTAGTAACCACATCAAATCCATCAAGACGTTAGATGCGTCCAGGCGTGTGAAGCGTCACTGGGAGTATAAATTTGATGCTGTTGGAAACATGCTCGAGAGAAGAGATTTGTCGCAGCAGTGGAACTCCAAGGAGTCCTTTTCCTACGATTCACTGGACAGAATCACCAAAGCAAACATACGAAGCATGAACCCGAACAAGGAAGCGGCGTTCAGTGAAGACTGGGAGTACGACAGTATTGGAAATCTGCGCAGGTACAGCGGGTTTGGAGGTCTCCATCATGAATACAGCACCTCACAGCCTCATGCCGTCACCAAAGCTGGTCCCAACACCTACTCCTACGATGCTAACGGGAATATGGTACGAAAGAACAATCAACACGTTGCCTGGACCTCATTTAATAAGCCCAAAACTATAGAACGAAAGTCCAAAGGCATCGTCAAGTTTGAATATGACGCAAGTGAAAATCGTTTCAAGAAATCAAGTCCTGAAGAGACCAACATCTATATCGGCAAACTGTACGAAAAGGTGACCGACAAACAGAAAATTACCCACAAATACTTCATATATGCTCTTGGAAGGTTGGTGGCCATTGACGCCAAGGTTGAAACAGAGTCGTCGTCCTCGTCTTCAATGAGATACGTCCATGGTGACCACCTTGATTCCGTCGACACAGTAACTGACGAGCGAGGCAATGTTATTGAATCACTGAGGTACAACGCGTATGGACAAAGACGTCCCGCACAGTGGGCCAGCTTTGAAGGGTGTACAATTCATTCGCAGCGTGGATCCGTTTACACCAAACGAGGATTCACAGGACACGAGCATCTAGAGGAGTTGGATCTGATTCACATGAATGGACGAATATACGACCCTGTGGTAGGAAGGTTCCTTAGCCCAGACCCCCATATCCAAGACCCTTACAACACACAGAGCTTCAATCGTTACAGCTACACGTTGAACAATCCACTGAAGCACAAAGATCCTACTGGTTACTTCTTTAAAAAAATTGGTCGTTTTTTCAAAAAATACTGGAGGCCCATCGTTGCTATTGCAGCCACAGTAGTGACATTTGGAGCAGCTGCTCCCATTGCTGCGGGGTTAGTTGCATCAGTAGGGTTGACCGGTGTTACTGCAACTGTAGCAGCTGGCGCTCTTGCAGGAGCAGCCTCTGGATTCGTCGGTGGCTCAATTTCTTCAGGATCTTTGAAAGGTGGCTTGCAAGGGGCATTAGGTGGAGCTGTATCTGGTGGCATCGGTGGGTACTTTGGCAGTACGTGGAACCTTGAACGTGTGGCGACCCAGGCAATAGGTGGTGGCACAGCAACGGAACTCAGTGGTGGGAAGTTTAAAGACGGCTTCCTAATGGCGGGAATAACAGCATCCGCGCACTATCTCTACCACTCAGTTGTGAACTATGAACCAGAATGGAAATCAGGGGGTCCTGCCCAGGCGAAAGGTCAAAGCACGATGCCCATAAAAGGAGCGAACAACATTGGTACCCAAGGTCACAAGACCATAGACCCATCAGGATGGTTCAACGAGGGAGGAAGGATTAGCAGATTTTTAAACAAAGTTCCGGGTGTCAACTCTGTAGCAGGGATGCACGATGTCTTCCAAGTCAGATTGGATGGTGCATTTTTTCCTGGTGCCAGGGATATCTTGAACGTCCCAGGAATGATCCCAGCCGCTGCCATCTCTTATATTGCCCTTCTCGATGGCCCAGCGGAATCAAATTCACTCAAAAGCGAGAGAGTTATCAACAAGTTACAGAACTTCCAACACGACGACGTCTTGTTCGAGTACTGTCGACTACCTGCCGTCCGCAAGTATGCCGAGTGCTTCACGGGCCCTGATATGTCAGCTGCCCATACTATGTTGATAAACAAGCCTCCAGACCCCGGCACCCAGTCTTCAAGACACCCATTGCACCAGGATCTGCACTACTTCCCATTCAGGCCTGCGAACAGGATTGTATGTTCTTGGACAGCTATGGAAAAAGTCACCCGTGCAAATGGCTGCCTTGTTGTTATACCTGGCACCCACAAGAAAGAGCTTCTCAGACATAGATACCCAGAATGGAAGGGCGGTGTCAATATTTTGTACCATGGTATAAAGGACTTTGACCCAAATGCTCCCATGGTTCACCTGGAGATGGAAGCTGGGGATACAGTGTTTTTTCATCCATTGTTGATCCATGGCTCAGGCACTAATCGTACAAATGGATTCCGTAAGGCTATTTCCTGTCATTATGCAAGCTGCCACTGTCATTACATCAGTGTTAAGGGTACAGTACAGGAGGAGATTGCCGAGGAGGTGCTTGGTATAGCCAAACGTAAACTAGGCAGTGATTTGTTGGACATCAGCTTTCAGGTAAAACTACGTATGTATGTAGTTACAGAGTTTACTAACTTGATACCTAGAGAGAACAAACTACAT

Transcript

Actinostola_13075

Protein

Actinostola_13075

IMAQYSCLLLAILVALIKSSFSYEVGNMFTEFKVEQGQAKYTVPVTTPKGFPNNLLELQLQYSSGGSNGPMGLGWSIGGLSQIVRCPKTPAQDGQRRGIHYDRSDRFCYEGSRLVLTSGVYGADGSTYGTELDSYLRAYANGAQGVGPQRFLIKTKNNQKLTFGSHGNSRVVSHGQQSIHAWKLDSISDYTNNVVKIMYVHNTNGLLVSRISYKNMLITFEYEARSDVSKQYFNGGVFHTQNQRLRSIKTSVEGQLHREIKITYLAAKTSKQSVVSSLQLCSRGGKCYKPEKLSYQGTVDAERTNNPRYWIHEFGISAGGWAVGKHPRRVVDMNDDGLADIVGFASGGVMVALNQKGSFKRSRTWVHSFGSSAGGWGNQHPRHVIDVNGDHLPDIVGFANAGVYVALNTGKESFTSHKLWLRQFGYTAGGWRVENHPRFVKDMNGDGLPDIVGFASGGVYVALGTGSSFQQSRLWVASFGYSAGGWRVANHPRFLEDVNGDGLPDVVGMASGGIYVSINTGSSFQSPSSWGNGLFGYNQGWRTNQHPRYVLDVNGDGLADVVGFSCCGVEVSLCTGKRFLPSKTWSRRFGYKNGWRVDAHPRFVQDVNGDGLPDVVGFANDGVRVSLNTGSSFSYDKLWVSQYGKSAGGWSVQQHPRYLADVTGDGILDIVGFASSGVYISTNNNKQTLLTSITDSYANTHKMTFSSLADKTIYTRGTTLSYPNPKVNIAQTVVKQFTQNNGIGGLNITSYTYSGMRINLKGRGALGFSEVTEKRHESGETVVTSYFQDFPLTALTKSVTKKVGSGLVLQSFKSYGSRGSGQKQVFLKKDVVNHYELNGRLVRTEQLIIDSTDNYGNINVMRKISSGNGNSFLQTTINNYTNNPHTWYIGELDAVSVSYRTDSTTIVRRSTFYYNRNTRTLMYELRESKHHLGLKTSYVYDSNGNVVEKAETPIFPSSASQVVPTSRRVFMTYDSEGLRLMSVRNDYGHTESYKYDVFGNIERFTGANGLKTTYTYDAFDRRIQETRPDGIATKMDLYLDIEYDSFGRVRRQSLPYYSKDQTPSWIVFKYDRVGRGVVEERPLEGPGSALTMKVYNGLVTETIDANGNRNKVERDALGRIVKVTDALGGTVKYQYDPVGNLIKTIDPVGHVTSMTYDQLGNKVSIDDPDMGLWKYSFNAHRQKLWQKDAVANELFYTYDKLGRMVEQRSPEGRTRWIYDQSAYGKGKLSKTESPNGHVMEYVYDAKGREATVKQRIDGKNFDIHSSYNDLGQLTQQTLPGNKKVNYCYDNQGFMTVVSTQPCGKGSIQSAYWRALAYDSFGHIAKEQYGNSLLTDYKYDGSNHIKSIKTLDASRRVKRHWEYKFDAVGNMLERRDLSQQWNSKESFSYDSLDRITKANIRSMNPNKEAAFSEDWEYDSIGNLRRYSGFGGLHHEYSTSQPHAVTKAGPNTYSYDANGNMVRKNNQHVAWTSFNKPKTIERKSKGIVKFEYDASENRFKKSSPEETNIYIGKLYEKVTDKQKITHKYFIYALGRLVAIDAKVETESSSSSSMRYVHGDHLDSVDTVTDERGNVIESLRYNAYGQRRPAQWASFEGCTIHSQRGSVYTKRGFTGHEHLEELDLIHMNGRIYDPVVGRFLSPDPHIQDPYNTQSFNRYSYTLNNPLKHKDPTGYFFKKIGRFFKKYWRPIVAIAATVVTFGAAAPIAAGLVASVGLTGVTATVAAGALAGAASGFVGGSISSGSLKGGLQGALGGAVSGGIGGYFGSTWNLERVATQAIGGGTATELSGGKFKDGFLMAGITASAHYLYHSVVNYEPEWKSGGPAQAKGQSTMPIKGANNIGTQGHKTIDPSGWFNEGGRISRFLNKVPGVNSVAGMHDVFQVRLDGAFFPGARDILNVPGMIPAAAISYIALLDGPAESNSLKSERVINKLQNFQHDDVLFEYCRLPAVRKYAECFTGPDMSAAHTMLINKPPDPGTQSSRHPLHQDLHYFPFRPANRIVCSWTAMEKVTRANGCLVVIPGTHKKELLRHRYPEWKGGVNILYHGIKDFDPNAPMVHLEMEAGDTVFFHPLLIHGSGTNRTNGFRKAISCHYASCHCHYISVKGTVQEEIAEEVLGIAKRKLGSDLLDISFQVKLRMYVVTEFTNLIPRENKLH

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03534	SpvB	Salmonella virulence plasmid 65kDa B protein	Family	Interproscan
PF05593	RHS_repeat	RHS Repeat	Repeat	Interproscan
PF05721	PhyH	Phytanoyl-CoA dioxygenase (PhyH)	Domain	Interproscan
PF13517	FG-GAP_3	FG-GAP-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003284	Family	Salmonella virulence plasmid 65kDa B protein	Interproscan
IPR006530	Repeat	YD repeat	Interproscan
IPR008775	Family	Phytanoyl-CoA dioxygenase-like	Interproscan
IPR013517	Repeat	FG-GAP repeat	Interproscan
IPR022385	Domain	Rhs repeat-associated core	Interproscan
IPR028994	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR031325	Repeat	RHS repeat	Interproscan
IPR047128	Family	Phytanoyl-CoA dioxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21308	PHYTANOYL-COA ALPHA-HYDROXYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001561	Biological Process	fatty acid alpha-oxidation	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0048244	Molecular Function	phytanoyl-CoA dioxygenase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-