Gene detail

Detailed information of Actinostola_12750 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_12750	SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52	scaffold250_size453130	131828	168570	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_12750

TATTCATTCGAGAGTCTGTTTCGTAGCATGCATTACGCACTTCTGGACAACTGTTGTCGGGAATATGTGTTTTTGGCTGACTTCTTTATGGTTCAAGGATTCCAGGCTAGAGATGTCTTCACACAAGTCCTTGGAAAAACTCTTTCTTTGTTTCTGAAACAAATGGATACTTACATCGAAAGTTGCTATGATGCCATTGGACTTTTCCTTTGCATTCACATTACCCATCGATACAGAATTCTGATGCACAAAAGAAGCGTTCCAGCTCTCGACAACAACAAGGATTCAATACTCCAAGAATTCCAAATTGAGAACTCAGGTTTGCGAATACTAATAGCCACCATTGCTTTTGGTATGGGCATTGACTGTAAAGGTGTCTCTCGAGTAATATATTTTGGTCCCTCCAAGAACATTGAGGCTTATATTCAGGAAACTGGAAGGGCAGGAAGAAATGGACAGCAAAGTGTTGCTTTTATAGTCTACCAGGGACTTATGCTCAACCATGTTGACAGTTTTCTTGCTTTGGGATATGTTGTTGTGGATATGTTCCCACATAGCGAGCGTTACCTTGATTTCGGTATTGGAATACTTTACTGTATATACAGGTATTGGGATACTTTACTGGAGATGTTTTGGCCTCGGTTTACCAGCATCGTTGAGATGAACATAGAAAGTGTACAAAGTACAGACCCACAGAAACTGGGTACCATTGATATTCGACCTCACTATGACAGAGATGAAACAGTGCGAAGTTTTGGCGCTCGACTGCGAGGCCAGGCCGGAGTATGCAAGTTTACCACACAATGCCTGGAATGCAATGCCAGTGTCAACTACACAGAACACATCCTTCGTGACGTCCTAACACGTGGCCTCTCAGACAGCGAGATCCAACTTGACCTACTCGGAGACAAAAACCAGGATATGACCCTCGAGGAAGTACTCCAATTTGTGGAGGCCAAAGAGTCTGGAAAACGGTCAGCCGGCCGCCTCATCCAAACTCAGGGAGCCGAAGCAGCTCGCAGCCAATACCGGAGCACAAAACAGATGGAACTTAAAAACCGTAGGCCTGACAACCACAAACCTGACCCATGCCATTACTGCGGCAAGCATGGACATGGCAATAATTCTCCTACCAGGATTAGAAAGTCAGAATGTCCAGCTTATGGAAAGACCTGTGACCACTGCGGCCGTGCAAACCATTTCGCGGCCGTATGCCAAGCGAAATCACAACCAGGCAAGCGACCATCCAACTTCACCTCACCCAGCAACCTAGTCACAGAAGGCGCCATATTCGACACCCTGTGCACGGTTACCAACTCTAGCCAAGATCAAAGTGTAGGTACTATCACCCTCGACCATCACCTGTATAACCACCTTAATGATTGCTGGGTTCGGAAAACGTCGCAGCCACAACCATTCCTAACCCTCACTACCAGCATATATCCTGATGACTACACAGCACTCGGGTTCAAGCCAATCAGCCAGCAACCCCAATCCATACAACTCTCTGCCATGGCAGATACAGGATGCCAGAGCTGCCTCACAAGCATGACAGTCGTTCGTTGTCTTGGTCTTAGCAAGAAGGACCTCATCCCGGTCTCAACACGCATGCATGCAGCAAACAACAATGGCATTGAGATCCTGGGCGCCATCATCCTAAGATTCTCTGGCAAATCCAAATCTAATCAGATACGTGAAACGAGACAAATCGTTTACGTGACAGACGATTCTGACAAGCTATTCCTGAGCCGAGAGACCTGCACAGCACTAGGACTGATCCCTGGCAACTTCCCAACGGTGGGTGAAACCCCTCAACCCAGCAACTCTTCCGATGCAGCAGGACAAACCCACCAACCCACCCAACTGAATATACCAGAGAGTGCACAGCACCCACCATGTGACTGCCCACGCCGTGTGACACCCCCACCTAAGCCAACTCAACCACCATTCCCCACAATCGTGGCTAACAGACAGCGTCTACAACAGTGGCTGCTGGATTACTACAAATCCAGTACCTTTAATACATGCGAACACCAGCTGTTGCCTCTAATGGATGCTGTCCCCATGCGGCTCATGGTCGACCCTGATGCAGAGCCAGTTGCTCATCATACACCAGTACCTGTCCCACTACACTGGCAAGCAGATGTGAAGGCTGGCCTTGACCATGACATATCACTAGGCGTCCTAGAGCCAGTACCAGTAGGAGAGCCAGTGACATGGTGCCACCGCATGGTAGTTTGCGCTAAGAAAAATGGTAAACCCCGCCGCACAGTGGACTTCCAGGCATTAAACCGTCATGCAACACGCGAAACCCATCACACGCAAAGCCCATTCCACCAAGCACGTACTGTGCCTAATAACAAAAAGAAGACAGTGACTGACTGCTGGAATGGCTACCACAGCATCCCGCTACACAAAGACGACTACCACCTCACCACCTTCATAACCCCATGGGGGCGGTACCGCTACAAAACAGCCCCACAAGGCTACATTGCATCAGGCGATGGCTACTCAAGAAGATTTGACGAGATTGTCTCTCACGTCCCTAACAAAACCAAATGTGTCGACGACACCCTGCTTTGGGCAGACAACCTCAGTAAAAGCTTCACCCAGGCAATTGACTGGTTAGACCTCTGTGGACATCACGGCATCACCCTCAACCCAGACAAGTTTGTATTTGGAGCCGACACTGTCGAGTTTGCAGGATTCGAGATCACTCCAGACAGCGTACGCCCCTGCAAAAAGTACCTCGATGCAATACGCAACTTCCCGACACCAGCCAACATAACTGACATGCGCTCCTGGTTCGGACTCATCAATCAAGTGTCATACGCCTTCGCAGCAACCAACCGAATGTTACCATTCCGCCAGTCACTCAAACCTGCAGAATCATTCAACTGGAACAACACACTCGATCAGCTCTTCGAGGAATCCAAAGCAGCAATTGTAAGCTGGAAAGTAGCACTAGTTGGAAGTCGTTTCACCCATGCTGCCGAGTCACGTTATGCCCCAGTTGAAGGAGAAGCCCTTGCAGTGACCGATGCCCTAGATAAAGCACGATTTTTCGTCCTGGGCTGCAGCAACCTCATCATCGCCGTGGATCACAAACCACTCCTGAAGATATTTGGGGACCGGTCCCTTGAGGACATCTCCAATGGCAGGCTCCGCAACCTAAAGGAGAAGACACTAAGATACCGATTTAGAATGATACACATCCCTGGCGTGCAACATAAAGCTGCTGATGCCGTCTCACGCCACCCCACTGGCTCAACTAATCCAGACCTGCTAAAGCTAACTGACGACATAGCAGCCATAGACCTCACTCTGCATTCAATCATGGCTGGCACACGCTGCAACGAACCCCAACTAGAATCATGCTCCCATGAAATCGACAACCAACTGACATCATCAGCTGTGTCTGCCTTAAGCACTTTGGCAATAACATGGGACAGAGTTAAACTAGCCACCACCAGTGACGAAGATCTGAGCCAGCTGGCCTCCATCATAGAATCTGTCGATGGAGTCATCCTTTACAAGGACCGTATCGTCATACCAACCGCACTACGACAGCAGATACTGGCCATACTCCACTCAGCACACCAGGGTGTGACCTCAATGACTGCTCGAGCTGAATCAACTGTCTTCTGGCCAGTAGATCGATACTCCAACTGGCCAGTCATCATCGAAAGAGCACAAGACGGTTCAAAGGGACTAATCGACTGCCTGCGACGCATATTTGTGACATTCGTTGGCAATTATGTGCGCATCCAAAACCAAACCGGTCCACATCCAACAAAATGGGACAAAACAGGTACCATTATCGAAGTTCGCCAGTTTGACCAATATGTGATAACACGACGTTATGCTGAATTTTCTGCTGCCATTGTTAGTCTTAATGAAAGTTTTCCAGAGGAAAAGGTTAATAAAGTGTTAGCTGCTTTACAAAATGAAGTAGAAAACTTTATTCTGAAAATGGCTGCAGAGTTTCCTCCCCGCAAAGATCAGCTGATATTCCTTATAAACAATTATGATATGATGTTAGCTGTTTTGATGGAGCGAACATCTGAAGATTCAAAAGAAGTTGAAGGATTTCAACAGCTTCTTGCGGCAAGAATTGGAGAGTTTGTAGAAGAGATCCTCTTCAGGAAGTGGTTTTCTGGAAGCAATACTGAAAGCTTCGGCAAGAAAGGCTGCCCTTCTCGTAGAAGCTGCGACTTTAAGTAA

Transcript

Actinostola_12750

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF20655	Vps52_C	Vps52, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR007258	Family	Vps52	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR048361	Domain	Vps52, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14190	SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000938	Cellular Component	GARP complex	Interproscan
GO:0006896	Biological Process	Golgi to vacuole transport	Interproscan
GO:0007041	Biological Process	lysosomal transport	Interproscan
GO:0019905	Molecular Function	syntaxin binding	Interproscan
GO:0032456	Biological Process	endocytic recycling	Interproscan
GO:0042147	Biological Process	retrograde transport, endosome to Golgi	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-