Gene detail

Detailed information of Actinostola_07445 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_07445	ELONGATION FACTOR 1 ALPHA	scaffold862_size197997	118088	143263	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_07445

ATGAAAACTCTGCGTGACCACGAACAACAGCTACTGAATCAAATCCAGAGTAGCATCACGAAGGCCGACAGTAATGTACGCATATTACGACACACCCCAGCAGCCAAGGAATACATCCAAAACATCATCGACAATGGAATAGCAAGTGACATGATCGACATGCAAGACTGCTCTAAACAATTCACCTACAACCCGTTTAAAAGACACATTTCAGGAATAGTCTTCGACCCCAATGAAGACCTGAGCCAACAAGTGAACATTGGACCTGGAGAAGTGCGATTCTGTGGGTCTCTAGCAGATCCAATGATGAGCACAGTTCAAGTTGACTCTCATCTCGAGGCCACGAAGAAAGCAAAGCTGACTGTGATGATGAAAACATCAACTGGACAAGTCATTGATGAGCTGACGGATGACAATGTGGACATACAGATCAGCCCTGAAGACGATGTACAAGTCGAAGACAAACAAATGAAAAGTGGTGGTAAAATAGAAGTGGAATTCATCCCTCGAGTACCTGGTCAATTGACAGCACAGGTTCAAGTGAACGGTAATGCTGTATCTAACAGTCCACTAGTGATGGATGTCAAGCCACAGCACATGGACGAAATAACAGGAGATTCTAAGTTAAAAAATGCCTTGAATACTGGATCTATGGACTTCAGTGGTATTGCAGTGAATAAGACCAACAGTAGGGTTGCTGTAGCAGATTGTGGATCTCACTGTGTTAGAGTATTCAACAGAGAGGGAGATTTGCTACTGACGTACGGTAGTCAAGGCAGTGGACAGCAACAGTTGAATTATCCTCAAGGTTTAGCATTTCTCAACGAAACAGATGTAGTGATATGTGATTATTGGAATCATAGAATATGTATAGTGAACACTACAACAGGGAAACTAGTGAAAACCTTTGGTTGTCAAGGTAACGGGAATCAACAGTTTAAATACCCATGTGGAGTACACGTTGATGACGACTGTAACATCATTGTTTGTGACACTAGTAATCATCGTGTTCAAGTGTTCACGAAGGACGGTGACTACCAATATCAATTTACTGTACCAAGTCACAACAGTTTTAGTCCATTCTGTATAGTTACACACAATGGACTGTTTTACGTGAGTGATGTTAGTAACAAAGTGATTCATGTGATTGAGATGAAAGACAAATCACCAACTAGAATATCCACCATTGGCAATGCTGCTGGTCAGGTGCAGGACCCACGTGGTCTGGCTATTGATAATAACCACAATCTACTGGTGTGTGATGCTGGTTCTAACTCGGTTCATAAGTTTACTTTGGATGGTCGTTTTGTAGGAAAGACAAATAAACTAAGTAGCTGGCCTTATTATATAGCAGCATTACATGATGGCACCGTTTACCCTAAGATGTTTAACACCATTAAGTACAAAGGCAAATCGATAGACTGTGATATCTTTCACACTATCGACCAGGCTGGTATTGGAACTGTCCCCGTTGGTCGTGTTGAAACTGGCATCCTCAAGCCAGGAATGGTTGTTACATTTGCCCCTGGGAACTTGACCACTGAGGTGAAATCGGTCGAGATGCACCACGAGGCGCTGACAGAGGCTCTGCCTGGAGACAATGTCGGCTTCAACGTCAAGAACGTGTCTGTTAAAGACATCAAGAGAGGGAATATTGCTGGAGCAAGAACAAGCTTCCTAAGAGTATTGGAAGTTTTGATGCCCAGGTCATGCAATTTACTCGTATCATTGACCTTTGCATTGCACCGACAGGAAGTTGCGATTATCGTATCGTTACGAATACAAAACCTCTCTCCAATGTGGGATGAGTTGAGGTGTATCCTGCGCATGACAGTGATGTCACAAGTGATCGTCCTGAACCACCCTGGTGAAATACACAATGGTTACTCTCCAGTGTTGGACTGCCACTCATGCCACATTGCCTGCAAGTTTGCCGAAATCAAGGAGAAGATTGACAGGCGAAGTGGCAAGAGTTTGGAAGACTATCCCAAATTCATCAAGTCGGGCGACGCTGCCATCATCACATTGGTCCCGTCCAAGCCGATGTGCGTGGAGACATTCCAGGAATTCCCGCCTCTTGGTCGTTTCGTAGTGCGTGACATGAAACAAACCGTAGCGGTTGGTGTCATCGAGGCGACCACCCCAAAAGACGTCGCAGGCAAGGCTATCAAGTCCGCTCAGAAGGCAACAGGGAAGAAGAAGTAA

Transcript

Actinostola_07445

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF03143	GTP_EFTU_D3	Elongation factor Tu C-terminal domain	Domain	Interproscan
PF03144	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR004160	Domain	Translation elongation factor EFTu/EF1A, C-terminal	Interproscan
IPR004161	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR009001	Homologous_superfamily	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44830	ELONGATION FACTOR 1 ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-