Gene detail

Detailed information of Actinostola_06776 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_06776	SID1 TRANSMEMBRANE FAMILY MEMEBER	scaffold743_size224265	965	32159	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_06776

ATGCTAAAACTCAGTGGATCTCAAAACACGAGATTGTTATTCCCTCATGAGAATAGTGATAATCAACTTGGGAAAGCGAAGGATTTGATCACAGCCCCTTTTGTCCAAGGGCGTGCCATTCATTCTGATCGAACATTATTGAATAACATAATGTCTCGTAGGATGTTGGGTAAACGCCATTGGCTAAAGATTGTGGTGTTGGTTGCCATAGAGATTATGACCAGTCTCAGGTATGTGCGTAGTTTCCAAGTGCAATGTGACTTTGGTGCATCAAACCAGTCGAGTATCAACTACTCAGCCATTGGTGAGCTCACCTCGCACTTCGGCAATGCTCGTAGTTGCAGAATATCCCATGGTATTTCTGGCATCGTACGAGTTCGTTTATCCAAACAGAGACATAATATCAGTAACATATATGCTGTTATTATAGAGAAGCAGGAGATCACATTTGTAGGAACGGCACGAAATAAAGACCTCATGTCAGGAAATGGGTACCACTTTCATGCCTGTCCCTTATCCCGTGACCCAGAATATTCTAGCAGCTCAAATCTCTTCATGTTTGGTACCCCTGAGAATGCAACCTTCAAACTGGACATAAATCTGGACAATACATCTCTGAGTGCAGGAGAATCCAAGACTATTCAGGCAGATAAGAATGGAATGGCACAAGTGTTAGCTTTTGATGTAGCCGAAGAAAATTTGTTCAAACTTTTACAAGTTTCTGTTTCATCAGATGATGATTCAGTGTCGTACATGGTGGTATCTCAAAATTGTGCTCAGGTCCAAAGTCAAGGGGTTGGAATCATATCACAAGCTGTCCAACGTAAATCACTCTCTCTATCCTTTACCAAGTATGGCAGAATCACTCTCTCTCAGTATTCTTCGCCCAAAATTCAATCGGGACGCTGGTATATTGGGGTTGTGGTTCAAGACGCCTCTATTGGTAGTATTGAAAAGAAGACAGTAAATGTCAGTATTAAACAAACATACAGTTATGATACTGTAGGCAAGGGTTTGCCTGTTCTGTACATGTGTCTAATAACTGGAATCCTGGGAATACTCATCGCTATATTTGCACACTTTTTCCTTAATTCAGACTTCGAGGAGATGACACCACCATATTACGTCGACGATGACGCCCCTGTTGATGAAGAGACCAAGTGTAAGTCTTCCTTGCAGCGCCAATTTCCATCAAAACGTATCCTGAAGTTCATTCCCGAACCAATTTCTTGCAAGAGTTTCCCTTTTAAAACTTGGGTGAAAGTTATTTGTGTTCACTGGCTTGGGCGTGGCACCAAGACGTTCTCATACCTCACCGTCGTCCTCGCTGTTAGTTTCTTAGTGGGTTCAGCTCAGTTTGTTATTGGACGATGGTCGAACATGATATCAACGGGAGATCGTGACAAGTGTTACTACAACGAGAGGTGCTATCGTCCAATAGCATTTGCCGACCTGCCCTCCAATTTCATGATCAGTAACGTACCGTACTGCATGCATGGAGTACTCCTTGCCATAGCGTTTTCATTCCGAGAAGCCATCTGTCTTAATCACAGGGAAACTAACTTGGATATCCAGTCCTTGAACACCCAACACATACCATATGACTTCTCTCTTGCCTACGCCCTGTCATGGGCGTTGCTATTCGAAGGCCTTTTCTCCGCGACATATCATCTCTGTCCTTCAAGACTAACATTCCAGTTCGATTCGGCTTTTATGTTCATCATATCAGGCCTGGTGGTGGTCGCTCTTTTCAACGCTCGCATTGAGAAAATTAAAGACGCCGACGTGAATCGTCCCCCTGACGAAACCATCATCCAAGCACCTAAGTACTTCCTCTTCTTCGTCGCTCCTTTGTTGGTCTTGAATTACGTGGGGTCCATCCGAGACACCTCTGGTTTACCGCCATTCGTTGAGGGTGTTTACTGGGTGGTACTAGTGGTATGGTTGGTAGTTATGTACGTTTGGGCGGTTCGTAAAGTGGGCGTGGCATCCTGTCGTGGAAGTGGGTACGCTGAGAAGTGTGGGTGTTCTACTTGGGAGGACCGGGTGAAGTGGTTTTGGCTGATCTTGATACCCGTGTGTGTGTTCATCATTGGAATCAACAAGCTCCAAGACTGGTCTCAATTCTTCCTGTTCTCCTGTGTGGCTGCCGTTGTTCTAGCCATCGCTGGTCTGTTGTCTTTGAACTTGTTAGCATCATTCAGACGGCTCAACGACGCCTATCGAAAAATGGACGACGATGAAGGCATGTGTGATGGTAAAGCGTGGTGTCTCTATTTACTTAAAAATCTCCACCGCATTCTCTTCAGTATAGCACTGTTCCTGTTCTGGGTGTTCGCCATGTATTTCTTCAAGCTGAAGCCAACAACCAGGAAAGTGGCTCCGCCCAGCATATCACGTGTGTACAACGACGAGTGTGTCCTGTGGGAATTCTTTGATTACCACGATATCTGGCACATGTTGTCGTCCATTGCTCTCTTCATGAGTGCCTTGCTGCTGATTTACATAACGAGAAGCGTCGAGAAGCAGTACTGGCTCGAGGCAATCTACTGGAAGAACCACGAAGGCCATGATAAGCTCACTAAACGAGCTGATGCCAGTACTCAGTCCTTGGATAGCCATAACGATATCAACAACGTCCAACTAGAAGAGATATCTCACAGTCCTACCATCGAAGTCCAAGATGGGCATAATTCTTCCAGTTCGACTTCAAGGTCCTCGCGAAGTCGTTCCTCTGGGAACACCGAGGAGGTCCACATCGGCCGATATAGACTCATTAAAACTATTGGCAAAGGCAATTTTGCCAAAGTAAAACTCGCAAAGCATATCCCTACGGGGAAAGAGTTGTTTAGAGAAGTACGGATAATGAAGTTCCTCGACCATCCTAACATAGTTAAACTTTATGAGGTTATTGAAACTGACAAGACGCTGTATTTAATCATGGAATATGCCAGTGGAGGTGAAGTTTTCGATTACCTTGTCGCTCATGGAAGAATGAAAGAAAAAGAAGCTAGGGCTAAATTTCGCCAGATGAAAAGACTACAATACTGCAATAAAGTCACGTGA

Transcript

Actinostola_06776

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF13965	SID-1_RNA_chan	dsRNA-gated channel SID-1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR025958	Family	SID1 transmembrane family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12185	SID1 TRANSMEMBRANE FAMILY MEMEBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005764	Cellular Component	lysosome	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0050658	Biological Process	RNA transport	Interproscan
GO:0051033	Molecular Function	RNA transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-