Gene detail

Detailed information of Actinostola_06558 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_06558	DNA POLYMERASE ALPHA CATALYTIC SUBUNIT	scaffold6_size1455009	886044	902159	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_06558

ATGAAGACCAAAGACCTGGTTCAACAAATGCATCTTGACGTCATCTATGGAGACACTGACTCCATCATGATCAACACCAACTCGACAGACTTGGCTGAAGTCAAGAAGATTGGTAACAAAGTGAAAGGCGAAGTGAACAAGCTATATCGTTTGCTAGAGATCGATATTGATGGTATATTCAAGTCTATGCTCCTTCTAAAGAAAAAGAAGTACGCAGCAATCTGTATCTCAGAGAACAGCGATGGTACCCTCAATGAAGTACCAGAGATGAAAGGTCTGGATATCGTGAGAAGAGACTGGTGCGATCTTGCAAAAGACACTGGAAACTACGTTCTGGCCCAGATTCTCTCGTCTCAGGCACGCGAGACGATACTGGACAACATTCACGAGTATTTGATCAAGATTGGTGAGGACATCAAAGACGGCAACATCGACATTGCGAAATACGTCATAAACAAGCAACTGACCAAATCTCCCCATGACTACCCTGACAAGAAGTCTTTGCCCCACGTGCACGTGGCCCTATGGTTGATGAGCAAGTCAAGGAAGGTCGGCGTTGGCGACACTATTCCCTACGTCATCTGTGACGATGGTTCGCCATTACCTGCGTCACAACGTGCCTACCACCCTGATGAGTTCCAGAAATCTGACACCCTGAAGATTGGTCTAGATCCATCGGGATATCGCAGCAGCGCGTCACACCGTGATGACGAGAGTGATGCTCTTCTTGGTGGTCAGGCGCTCATGACAGATGAGGAAAGATTCAAGGAGTGTGTTCGCTTGGTTGTCAAGTGTAGACAGCCTGGCTGTGGTGTAGAGACGACATTAGAATCTCTTGTTCAAAGTCAGGATCCTCTACAATTCAGTGCCGAATGTCCAAAGTGTAATAAGGTCTACAACGAGGCAGCAATACTTAACCACGTGACCGTGACGATACGTAAACACTTGAAAGAGTATTATGCTTATTCAGATACGTCTTTATACAACCAAATCCTGTACTATAGCCGTCTCTTTGATGTGGATTATGCCTTGAAGACCATGAGCAAAGAAGCAAAGACGGGAAAAGATGATGCCAAAAGAGGTGAAAATCTAGAAAAGCTCCAACAAGGAGAAGAAGTTGATATAGACCTTCGGGATCCAGAGGTCCAAGCTGCTGCGACAAAGATCCAGGCCAGCTTCCGTGGTCACAAGGTCAGAGAAGAAGTCAAGCATAAGAAAGAGGAAGAGGCTGCTGCACTCAAGATCCAATCAAGTTTCCGTGGGCACCAAGCAAGAGAGAAGGTCCAGGAACTCAGGGAGACAAAAAGTAAGGAATCCCTAGAGGGTACTCCTACTACGGAACCAGAGAAACCACCAGAAGATGAAGTTGACATTGACTTAACAGACCCAGAGGTAGGAGCTGCAGCTTTAAAGATTCAGGCATCTTTCCGTGGACACAAAGCAAGGTCAGAAGTCCAAAAAAAGAAATCATCAGAGTCAGTTCCCAGTACTCCAGACAAAGCAGAAGGTGAGAAGGATGGAACAGAGGAGTCAGAAAAACCTGCTGAACCTGCAGCAAAGGAGGAAGATCCACCTAGTGAAGAACCAAAAGTTGATGAAGCTGCACAAGAAGTAAAAGATACCAGTTCTACTGATCAACAGGAGACAACAGCTGAACCAGCGGCAGAAGAAATTGATATTGATCTCAATGATCCAGAAGTTAGCAAGGCTGCTACTAAGATCCAGGCAACATTCAGAGGTCACAAGACCAGAAAAGACATAAAAGATGGAGCTTCCCCAGCACAAAGTCAAGAGTCTTTAAAAAGCACTGATGCTGCTGTAGAACCTGCAGCAGAAGCAGAAGCTGCTTCAGAGCCTCAAGAGGCAGCTCCTGAGACAACAGAGGAACAATCTTCAGATGCTGCAGAGCCTGAGCCAACTGCAGATGAGGGCACACAGGAAGCACCATCTGAAGGACAGGAAACAACTCCAGAAGCATCCTCAGAAACTCAGGAAGCAGCTGCTCCAGAGGTACAGGAAGCAACCCCAGAAGTACAGGAAGTAGCCCCAGAAGTACAGGAAGTAGCCCCAGAAGTACAGGAAGTATCCCCAGAAGTACAGGAAGTATCCCCAGAAGTACAGGAAGCAACCCCAGAAGTACAGGAAGTATCCCCAGAAGTACAGGAAGCAGCCCCAGAGGAAGCTAGCAGTGAGGCTCAAGAAACTACTGAAGGTGAAACAAAAGAAGCAGAGCCTACCCATGAAAGTGAACCTGAGAAGGGGGAGGTAGAGAAGGAAAAGGATTCCCAACCGGGGGAAGGAGAGAAGACAGATGACACCCCACAGGGGGAGGGAGAAAGTGTACCTGAGGCCAAAGATGGTGAATCATAA

Transcript

Actinostola_06558

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00136	DNA_pol_B	DNA polymerase family B	Family	Interproscan
PF00612	IQ	IQ calmodulin-binding motif	Motif	Interproscan
PF08996	zf-DNA_Pol	DNA Polymerase alpha zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000048	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR006134	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan
IPR015088	Domain	Zinc finger, DNA-directed DNA polymerase, family B, alpha	Interproscan
IPR017964	Conserved_site	DNA-directed DNA polymerase, family B, conserved site	Interproscan
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038256	Homologous_superfamily	DNA polymerase alpha, zinc finger domain superfamily	Interproscan
IPR042087	Homologous_superfamily	DNA polymerase family B, thumb domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45861	DNA POLYMERASE ALPHA CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0003688	Molecular Function	DNA replication origin binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005658	Cellular Component	alpha DNA polymerase:primase complex	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006272	Biological Process	leading strand elongation	Interproscan
GO:0006273	Biological Process	lagging strand elongation	Interproscan
GO:1902975	Biological Process	mitotic DNA replication initiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-