Gene detail

Detailed information of Actinostola_06479 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_06479	LD33695P	scaffold68_size782300	553393	602937	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_06479

ATGTGGTCCATCTCGTGGTTGAGCGTCTTGGAGGCACTCGCCATCGTAACAGGCAACGCCATCACCATCGTGCTATTCACAAGCACTCCTCATCTGCGCAGTCGCAAATACGCGTTGATTGTTAGCCTGGCTGTAGCTGATCTCTTTGTTGGACTCATTACAATACCTATGTCTGTTTACGTGACTGAAGGGCCAGGCCCTGACACCATCTCGTTCACCTTTGAATACATATTCCGACTTGTCGATGTGCTGTTTGGATCAGCGTCTATATATGGTCTGGCAGCTTTGGCCATTGAACGAGCGCACGCAACGTACTTCCCCTTCAAACACCAGACGCTAAGTACGGTTCAGTACATCGTTGGTATAGCTATCATATGGACGTCTGCGTTAGCAATTGCTCTAGTATCGGATTACATGTCTTCGTCAAAGCATGATCGTGTACATTTACTGACGCCAGTTATATCACTGGCAGTTTCACTCCTCATTGTTATTGTCGCATATTTCCTGATTTGGATTAAGGTTACCTGCACGGGAACAGTTCCGAGCCAAGCCATACATCAGAGCAACAAGAAACTGACCGTCACGCTTGCTATTGTCACGGGCTTGAGTTTTGTAACATTAATGCCACTCACAGCTATCTACATACATGCGACAGTTTGCGGTTTATCGTGTTTATACAATTACCCTCTCAGTGTGCTGCTTGCAGTTTCGATGTTCCTTCATTACGGCAACTCGCTTGTAAATGTCATCATCTACGCAATGCGCATGCGTGAATTCAAAGCTGAAATCGCACGCCGATTCAGGTGCTGTCACCGTCCTCCAAACCCACAACACGAGCTACGAGTTAGAGAAACGGTCTCCTGGTTAGGAAACAACGATAGTATAAATCATAACAACAACGATGGGGATGTTGAAGAAGATGGAGACAGGCCTGAACGTCGCACAGTGTTCATTAAAGATCACAAAGTCGCTTCTTTGTCGGACTTGCAGAAGGAAGACCTCGAGGCCATCCTGAGAAGAGAACGTTATTGTACAACTCACTGCCATCAAAGTATAGAGCTGTTCTGTCAAGAATGTGATGTGTTGATGTGTTTGCTGTGCTGGAAAGACGACCATAAGAACCACACAACAATGTCACTGCAGGAGTTCACCGCCTTCCAGAAACATTGTCTCTCTAAAAACCTGGAAGAAATCGAGAAGCTCAGGTGCGACGAAAAGAAACAACAAGAAGAAATCGCTCTGAAAATTAAAACCGACGGAGAGAAAGCTATAGAACAGGTCAAGAAAATCACCCAAAAGTTGGTGAAAACTCTGCGTGACCACGAACAACAGCTACTGAATCAAATCCAGAGTAGCATCACGAAGGCCGACAGGAATGTACGCATACTACGACACACCCCAGCAGCCAAGGAATACATCCAAAACATCATCGACAATGGAATAGCAAGTGACATGATCGACATGCAAGACTGCTCTAAACAATTCACCTACAACCCGTTTAAAAGACACATTTCAGGAATAATCTTCGACCCCAATGAAGACCTGAGCCAACAAGTGAACATTGGACCTGGAGAAGTGAGATTCTGTTGGTCTCTAGCAGATCCAATGATGAGCACAGTTCAAGTTGACTCTCATCTCGAGGCCACGAAGAAAGCAAAGCTGACTGTGATGATCAAAATATCAACTGGGCAAGTCATTGATGAGCTGACGGATGACAATGTGGACGACATACAGATCAGCCCTGAAGACGATGTACAAGTCAAAGACAAACAAATGAGAAGTGGTGGTAAAATAGAAGTGGAATTCATCCCTCGAGTACCTGGGCAATTGACAGCACAGGTTCAAGTGAACGGCAATGCTGTATCTAACAGTCCACTAGTGATGGATGTCAAGCCACAACACATGGAGGAAATAGCAGGAGATTCTAAGTTAAAAAATGCCTTGAATACTGGATCTATGGACTTCAATGGGTTGAAACCAGATCCGGAGAAGATTAGAGCCATTGATGAGATGCCAACCCCAACAGACAAAGAAGATACAGTGTTTGTGTGGGACACACCACAACAAGAGGCTTTTGATAAATTGAAATCTGTCATCACTAGTGCACCAGTATTAGCATACTTCGATAATGAAAAAGAGACGGTGCTAAATGTAGATGCAAGTGGCATTGGACTTGGTGCTGTGATCATCCAGGATGGAAAACCAGTTGCATTCAGTTCAAAGACCCTATCTTCCTGTGAAAGGAGATATGCCAATATCGAAAGAGAATTATTAGCAATACTATGGGGAGCACAGAAATTTCACACATATGTATATGGACGGCGAGTTATTGTGGAAACGGACCACAAGCCATTAGAAGCTATTTTTAAAAAACCACTGAACGAGACCCCCCCGAGACTCCAGAGGATGCTGCTCAAACTGACTAAGTATGATCTTGATGTACACTATGTCCCTGGTAAACAACAAGTTATCTCTGACTGTTTGAGTAGAGCGCCCTTAATCGACACAGAACCAGCCAGCGACCCTGAAGATGTTATTGGTGTAAATCTAATTGAGGAGCTTGGACTTGAAAGCAGCACGCTGAAGAGGTTCAAGGATGCATCAAACAAGGATGAGACTTCAAGGGTTGTAATGGAATATGTTCTAAAAGGGTGGCCACGAGAAAAAGACCAAGTTGATGAGTTAGCAAAGGAATACTGGAGCTACAAGGAAGAGCTGAGTGTGGAAGATGGATTGTTATTTAAATCTGACCGAATAGTTGTTCCAAGGTCATTGAGAGCTGAGATGTTGGAAGAAATTCATGGAGCACACATGGGAGAAAGCAAGAGCCTTAGTTATGGTAGAGACTATGTGTTTTGGCCCTCCATGACGGCCCAAGTCAAAGACAAAGTCAGCTCATGTCCAATTTGCAATGCCTTCCGCAACCGACAACAAAGAGAGACATTACATCCACATGACATCCCAGGATTACCATGGCAAGTGGTGGGAACCGACATATTTGAATATGCTGGACACTCATACTTACTAGTTACTGACTTCTATTCAAAGTACTTTGAAATAGAGTTACTCCGCCAGAGTACTGCCACATGTGTCATTAATAACCTGAAGAAAATATTTGCAAGGTTTGGAATCCCAGCTGAGGTTATCAGCGACAATGGGTCACAGTATAGCAACACAAGGAATCTGTTTAACAGTACACATGAGTTCAAGAAGTTTGCTGAAGAGTGGGGATTTTGCCATACCACAAGCTCGCCGGAGTATCCTCAATCCAATGGTGCAGCAGAACGAGCAGTACAGACAGCAAAACGGATCTTAAAGAAAGCTGCAGCAGATAACAAAGATCCATTTGAAGGCCTGCTGAAATACAGGAACACACCATTTGAAGACTTAGGTGTTTCACCTACACAGCTCTTGATGAGTCGACGTACACGCACAACAATACCAACTCATCGACGTTTGTTGTTACCACAAGCTGTGGATCCTAACCACGTAGTGAAGGTACTTCAACATCGTCAGGATGTTTCAAAGAAGAACTATGATAAAAACAGTTGGGATCTTCCTCCTTTGGATGTTGGAGACAGAGTACGGATTCGTCCAAATAGAGCAAAGGAATGGAGTAAAGCTGAAGTGCTTCCAAGATCCTACCTTCTGGAAGATGAGCGAGGGCATGTGTTTAGAAGAAATAGGAGACAAATAATTTCAGTTCCAAATGACCAACACATGACTCCACAGCTGCGTGAAACACTTACGAGTCCTCAGGCGCTTCATCGAGAGACTTCCAACCGACCAGAGATATCGGCACCAATGCCATTGGAGGTGACCATGGCTGTACAAGCTTCATGTATGGAACTGGCTTTGGAAGGGGAACGGCTATGCAAGGCCGGCGACTGCAGAGCAGGGGTTAGCTTCTTCGAGGCGGCCGTTCAAGTCGGAACAGAGGATCTAAAAACTCTTAGTGCAGTGTACAGCCAACTTGGCAATGCGTATTTTTACTTACAAGAGTACGAGAAGGCGCTGGAGTTTCACCGACACGACTTGACGTTGGCGAGGACTCTCGGTGATCGCGTCGGTGAGGCAAAAGCAAGTGGAAATCTAGGAAACACTCTAAAAGTGTTAGGGAAGTTTGACGAAGCGATCGTGTGTTGTACAAGGCATTTGGACATCTCGAGAGAACTGGGAGACAAGATAGGAGAAGCCAGAGCATTATATAATCTTGGAAATGTCTATCACGCGAAGGGAAAACACTTCGGTCGTAGCTTTAATCAAGACCCTGGGGATTTCTCTGATGAAGTTCGGTGTTCCTTGGAAAGAGCTGTGGAGTTCTATGAAGGAAATCTCACTATTGTTAAGCTCTTGGGAGATCGAGCCGCCCAGGGCCGTGCTTGTGGGAACCTTGGCAACACCCACTACCTGTTGGGAAATTTCGACTTGGCGATCATGTTCCACGAAGAGAGATTAGCCATTGCGCGTGAATTCAATGATAAATCCGCTGAGAGGCGAGCCTGCAGTAACCTTGGCAACGCACACGTGTTTCTAGGAGAGTTTGAAATCGCTGCCGAGTACTACAAGAGAACGCTTCAGATATCAAGAGAACTCGGCGATCGTGCCATCGAAGCTCAGGAGTACAACGATTCTGTAGCGTACCACATCAAGCACCTGGCAATTGCCCAAGAGCTCGGTGACAGAGTTGGCGAGGGTCGAGCGTGCTGGAGTCTGGGAAATGCTCACACGGCTCTGGGAAATCATGAGCTTGCATTGGAATATGCTCAGAAACATTTCGACATCTCAAAAGAGGTGGGAGATCGAACCGGTCAAATTACCGCGCAGATGAATATATCGGATTTGAAAGCCTTACTTGGTATTCAAGACAAGTCAACTTCAAACGATCATGACAGTGAAATGGCCGCTGAAGCGACGCAGAGAAGTACAAGTCCTGGATCCATCAAACAACTCTTCCGTAAGCACAGCAAATCGGACGCAGAAAAACGCAAAGATTCCCAGAACAAAGATCGCAATCGCAAAATTTCTGGAAATGCTGGTGCAAGGCCGGTAGATGCAGCACAAGTACGAGTACGAGTCTCTTCAACAGAGGTGAGTTGGCCTTGCGATGCCATAGGGGCTCGGTTCCAGTCTCTTTTGAGCTATTCGCAGAGAATCATGGCCGGGATCCACGGTTTCATCCTGGGTCAAGCCAAATTGGCGATGAAAGATACCGCTGTAATATCAGACAGCAATCGCTTTTGCTTGCTACTCCGAGAGAATAACCCGTGGAATTGA

Transcript

Actinostola_06479

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052386	Family	G-protein-signaling modulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954	LD33695P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000132	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0001965	Molecular Function	G-protein alpha-subunit binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005092	Molecular Function	GDP-dissociation inhibitor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005938	Cellular Component	cell cortex	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-