Gene detail

Detailed information of Actinostola_05673 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_05673	CADHERIN-87A	scaffold558_size280181	118711	128590	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_05673

ATGAATGTTCATGAGCCACCCAAATTTTCTCAAAACAGCATCGAAATCCCTGTCCAGGAGAACGCCCGAGTTGGTGCTACGGTGACCACCATTGCAGCAATATATGCTGATCCTAAAGCCTTCTTGAATTACAGCTTTCAGAGTGGCAACAAAGACAATGCTTTTTGTATTAATCGAGATGGTGTAATTACTGTTGCTCGTCCATTAGATCTCGTCAAACTGACTGACATCAATGACAATTCTCCTGAGTTTGAAAAAGAGTTGTACCAGTTTTCTGTCAAGGAGAATGCAGGGGTATCAACATCAGTTGGAAAAGTTGTTGCAAATGATCTCGATGCTGGTTCATTTGGCAAAATTAACTACAAACTTTTGCAAACTGTGGACGAGCAGAGCCAGAAATTGTTCAAGGTAGATGAAGGCTCTGGAGTCATCACTACTCTTGATAAGCTAGACTACGAGGACATCAGACAGCATTTCCTTTTTATCAAAGCTGAGGACAATAGTGCCACAAAACTAAGTGCCATCACCGAAGTGAGAATCGACGTTCAAGATGTCAACGATAATTCCCCAACGTTCTCAGCAACGTCCTACCGCGCAAAAGTTTCTCTTGATGCCACTGTTGGCGAACATGTCGTCCAGGTCACAGCCACAGACCTTGACAGTACCTCCAATGGGCTGGTTATTTACTCCATTGTTCGGGGCAACGATGAGCAAGCATTCAAGTTTGATGACAACAAAGTGTCACTTGAAGGTGAGAAGAACATGGACGCCAGCGCCATCTTGAATCGTTGGATTGTACTTCTGTACATAACTCATAAGCTTACTAAAGGGGATTCAGAGAAGACGGGGAAGTACGCCGAAGCCGTGGTTGAGAAAGATGGGAAGATTGCCTTTGTTGGCGCCCTTGGTGAAGCCAAAAGGATTTATCCCAAAGCCCAGAATATAGATCTGGGAGGAAGATGCATGATGCCTGGCCACATCGACCCTCATCTTCATCCATCCATGGCAAACTCTCAAGTCGACTGGGAAGCGGGACACTTTTTCGAGATGGGTTTGGATGCCCTCATGGCCACAACAAGTTTCAGAGACCAAGTGTTCCCCCTGATAGAAAAGGGCTATCCAGAGTTGGTGAAGGTGGTCAATCGAAATGGGATCACAGCTGTGGGTGACCTAGAATTTCCCTTGTTCGAAGAGGCACTTGAGAAAGACTTGGCAGAGAAGAATCTCAAGTCCAAAGATGCTTACTTTTCCACCTACTGTGTTGCCAGCTCCAGAAACTACGAACGAATGGCCGGAGGAGACCGAGAGAAAGCTATGAAGTTGATTCTAGAGGCGTCCGATAACATAAGCAACGATCAGGTAATGCTCTATAAAGACCACATCAAATTGCTATTGGATGGAGCATTTTATTCTCAGCTGATGCAAATGAAAGATGGTTACCTTGATAAACACGAGGGCCAATGGATAACTCCTCCTGAAGAATTTGAAGAAGCCATGGAAATCTACTGGAAGAACGGATACCAAATCCACATCCACACCAATGGTGATCTTGGAATGGAGGAACTTCTGGACACTGTGGAGGGTCTGCTGAAATGGTTTCCAAGAGAGAACCACAAGACAACTGTCGAGCATGCCGGCTACTTTACTGAAGACCAGGCCGAACGAATCGCTAAGATGGGCTTGATGGTTTCAGCAGCACCGTACTATTTCTACACTTTGGCCGACAAGTACAGCGAGAAGGGACTTGGTCCAGATAGTGCTCACGCCATCGCTCCCATGAAGTGGCTTTTTGAGAGAGGAGTGGTAACAGCTTTCCATTCTGACTTCACCATGGCTCCAGCACAACCGCTTCTATTTGCTTGGTGTGCTATTAACAGAATCACTGCTGAAGGAATGCACCACCGAGATGACCTCTGCTGCAGCGTCTACGAAGGTATGCTTGCCATCACCAAGAATGCAGCCATTATCCTGGGTACTGACGACATCATAGGAACCATTGAAGAAGGGAAGCTTGCCAATTTCACCATCCTGGACAAGGATCCCTTGAAGCTCCATCCAACTGCTATCAGAGACATCAAGGTTCATGCTTCAGTTTACAAAGGAAGAAAAAACATAGTGAACTTGTGA

Transcript

Actinostola_05673

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF07969	Amidohydro_3	Amidohydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126	Domain	Cadherin-like	Interproscan
IPR011059	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR013108	Domain	Amidohydrolase 3	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR032466	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR050174	Family	Protocadherin/Cadherin-related Cell Adhesion	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24028	CADHERIN-87A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016810	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-