Gene detail

Detailed information of Actinostola_04104 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_04104	GLYCOGEN DEBRANCHING ENZYME	scaffold35_size991627	275279	304131	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_04104

ATGCTACAGTATTGTAAACTATGTGCAAGGCTTTGTGCTGGCCTCCGACTAGATAACTGTCACAGTACACCCTTGCATGTTGCCGAGTATATGCTGGATGCTGCACGTAAAGAGAACCCAGAACTCTACGTGGTGGCTGAATTATTTACTGGATCTGAACTGTTGGACAATATCTTTGTTAATCACTTGGGAATAACATCTCTGATACGAGAGGCCATGTCGGCACACGATGCACATGAAGAGGGTAGGCTCATCTACCGGTATGGAGGAGACCCAGTCGGTGCTTTTATGGACCCCTTAGCGACCAAGCCTTTCGTACCATGCATTGCGCATGCGTTGTATATGGATGTGACACACGATAACGAGAACCCGATAAAGGTTCGGTCTGTATTCGACTCTATCGCTAGTGCTGCCTTGGTGTCCATGGCTACCTGTGCTTCAGGTAGTAACAGAGGATATGACGAACTTGTTCCACATCACGTATATGTGGATCAGATTCACACCGATGTACACGCCATCACTCGTCATTGTCCAGATAAACGTAAGACAGTCGTACTGGTCGCACACTCGGCCTTCAACCCACCACCAGACCATTTGCTACCTACACAGACCAACATGAAGGTACAAATGCATGGAATTCCATCACTCAACATACCTGGGGATATCGAGGAGGTCATATTCGAAGCAATGTTATTCAAGAAAGACAACATCAAAGTGTTTGAGAAAGACAGCCAGTACATCAACGGACTCCAAACACATCAAGTACTCATACAGGAAAACGTTGCAATTGGACAAGCTAAGACATGCAGGATAGTTCGCAAAGAAGGAGCCAACATGTGTGAAGTATTTTTTGACCATTTTTCACCTGGAAGTGTCATCGCCTTCCAAGTCATCATGGAGCCAAAAGTCGCAAAGGCTTTGGGACAGTTGAGATCTCTTTCTTGTGAATTGTATGGCAACAAGACTGGCCACCAAGACAGCGCCGACTCTGTAAAGGAGTTAAACACCATCTTAAGTAACCTGTCATTGTCAGACTTGAACCGTGTGTTGTATCGCTGTCAAAACGAGGAGGTAGAAGAAGGACAAGGTGGTGGTGTTTACGTCATACCTGACAACGGACCGCTGACCTATTGTGGACTACAAGGATTTCTGTCTGTTCTCACGGAAGTCCGCCAAAACAATGATTTAGCGCATCCAATCTGTAGAAACCTACGAGAAGGAAACTGGATGATGGATTATGTTGTCAACAGACTGTTGTCTGTCCATGGAACAAGACAATTCGCTGTGTGGTTAGACAAAGCTTTCAATTTAGTCAAGGAATGTCCTCGCTATCTTGTACCTTGTTACTTTGATGCCATCATCACACCTCTGTACCTGATGGTTTTGAAGAGAGCATGGGTTCACATGTCCGAGCATCACATCCTGGCTTTTGCCGGCTGTCTGCGTCACGGACTCATCCCCAATCTCCTCGACTGTGGCACCAACCCTCGATACAACTGCCGCGATGCAGTGTGGTGGTGGCTTCAATCTATCCAAGATTATTGTAAGATAGTCCCAAATGGACTAGATATTCTCAAAGACCCAGTGTCTAGGATATTCCCTACAGATTGCTCCGAGGCTATGGCCGTTGGTAAAGAGGAGAAGCCGTTACATGACGTAATGCAAGAAGCAATTCAGCGCCACTTCATCGGCGTCCAATATCGTGAGAGAGGGGCTGGGCCTGGCCTTGATATGAACATGAAGGACCAGGGTTTCAACTTGTCGATTGGTGTGGACGACAGGACTGGATTTGTGTTTGGCGGGAACGAATGGAATGCTGGGACATGGATGGATAAAGTGGGCGAGTCGACATTGGCGGGAAATGCTGGCGTACCGGCAACTCCAAGAGATGGCAGCGCCGTTGAGATCATTGGTCTTTGCAAATCGACGATTCGATGGTTGGCTGAGTTGAGTGATTCTAAACAGTTTCCTTATTCAGGAGTTTCAAAGCTACAAGATGGATTTCCAGTGGCCTGGACATACAGGGAATGGAACTCCAAACTGGAATTCAACTTTGAACAACACTTCTGGATTGCAGAGACGCCCAATCCATCCCTAGAGGGGGAGGAAGCGTCTTTAACAAACAGACGTGGGATTTATAAAGACTCCGTTCGTGCAAGTCATCCGTTTGCTAATTATCAACTCAGACCCAATTTTTGTGTTGCTATGACAGTGGCACCCGAGATGTTCAACCCTGAGCATGCGTGGAAAGCACTTGATGTTGTAGAGAATATTCTACTTGGACCTCTTGGACTAGCGACGCTTGACCCACAGGACTGGGCATACGATGGTATCTATGACAACAGCACTGATAGTACGGCGTTCAAGAGTTCGAAAGGATTTAGTTATCATCAAGGACCGGAGTGGGTGTGGTGTATTGGTCCCTTCATAAGAGCACGTCTACACTTTGCCAGGGTAGTGAAGGGAAAAGATGGCCTCACCCAGACGATAACCAAAATTTCCACTAACATCGAGTGTACGGCCACCTCGAAGTCTCAGCGATGGCGAGGCAAAGCTGACGGAGACAAGAGTGGGCAACTGAAGAAACCGCCAGTCGAATACCGCACACTAGATGCATTTCTTGACTTGATAAGCTCGGCTACTCTTCCCGTGACTATGAGTTGTTTAGAAGAACACAATAAAGTAGACTGTCGTATAAGTCGCTTCATACTTCCCCTTGGTGCGACCATCAACATGGATGGCACCGCCTTGTACGAGGCTGTGGCTGTGATCTTTATTGCACAGTGTAATGGTATAGATTTGAGTCTAATGGAGCTGATAACAACCTGTTTCACAGCAACTGCTGCGGCAATTGGAGCTGCAGGAATCCCACAAGCGGGATTGGTTACCATGGTAGTGGTACTACAGGCGGTCAATCTTCCTCTAACTGACATTGGTCTTATACTGGCTGTTGATTGGTTCCTTGATCGCATCCGTACAACAGTCAACGTACTCGGCGACGCGTTTGGCGCTGGAATCGTCGAACACCTATCACGTGATGATCTCATGAACTTGGACTTCGTTGCACGTGAAGAGATTGAACCGCTGGCCATGGAGGAAGACAAGTTCAACCCACGTGGTACGGTATCCACGATGAGTGCGCGGGAAAAACATAACACCGCGTCTGACTCGTCGCTCAGGGAAACGAATTTCTGA

Transcript

Actinostola_04104

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00375	SDF	Sodium:dicarboxylate symporter family	Family	Interproscan
PF06202	GDE_C	Amylo-alpha-1,6-glucosidase	Repeat	Interproscan
PF14701	hDGE_amylase	Glycogen debranching enzyme, glucanotransferase domain	Domain	Interproscan
PF14702	hGDE_central	Central domain of human glycogen debranching enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001991	Family	Sodium:dicarboxylate symporter	Interproscan
IPR008928	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR010401	Family	Glycogen debranching enzyme	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR018107	Conserved_site	Sodium:dicarboxylate symporter, conserved site	Interproscan
IPR032788	Domain	Glycogen debranching enzyme, central domain	Interproscan
IPR032790	Domain	Glycogen debranching enzyme, C-terminal	Interproscan
IPR032792	Domain	Glycogen debranching enzyme, glucanotransferase domain	Interproscan
IPR036458	Homologous_superfamily	Sodium:dicarboxylate symporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10569	GLYCOGEN DEBRANCHING ENZYME	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004134	Molecular Function	4-alpha-glucanotransferase activity	Interproscan
GO:0004135	Molecular Function	amylo-alpha-1,6-glucosidase activity	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005980	Biological Process	glycogen catabolic process	Interproscan
GO:0015293	Molecular Function	symporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-